Selected Publications

  • Z. Yang, A. Mitra, W. Liu, D. Berlowitz, H.Yu, “TransformEHR: Transformer-based encoder-decoder generative model to enhance prediction of disease outcomes using electronic health records”, Nature Communications, 2023

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  • J. Wang, Z. Yao, A. Mitra, S. Osebe, Z. Yang, H. Yu, “UMASS BioNLP at MEDIQA-Chat 2023: Can LLMs generate high-quality synthetic note-oriented doctor-patient conversations?”, ACL 2023 Workshop CLinical NLP, 2023

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  • A. Mitra, R. Pradhan, R. D. Melamed, K. Chen, D. C. Hoaglin, K. L. Tucker, J. I. Reisman, Z. Yang, W. Liu, J. Tsai, H. Yu, “Associations Between Natural Language ProcessingEnriched Social Determinants of Health and Suicide Death Among US Veterans”, JAMA Network Open, 2023

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  • Z. Yang, S. Wang, B. P. S. Rawat, A. Mitra, H. Yu, “Knowledge Injected Prompt Based Fine-tuning for Multi-label Few-shot ICD Coding”, EMNLP Findings, 2022

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  • A. J. Rose, J. S. Lee, D. R. Berlowitz, W. Liu, A. Mitra, H. Yu, “Guideline-discordant dosing of direct-acting oral anticoagulants in the veterans health administration”, BMC Health Services Research, 2021

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  • A. Mitra, H. Ahsan, W. Li, W. Liu, R. D. Kerns, J. Tsai, W. Becker, D. A. Smelson, H. Yu, “Risk Factors Associated With Nonfatal Opioid Overdose Leading to Intensive Care Unit Admission: A Cross-sectional Study”, JMIR Medical Informatics, 2021

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  • H. Ahsan, E. Ohnuki, A. Mitra, H. Yu, “MIMIC-SBDH: A Dataset for Social and Behavioral Determinants of Health”, Machine Learning for Healthcare, 2021

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  • A. Mitra, B. P. S. Rawat, D. McManus, H. Yu, “Relation Classification for Bleeding Events From Electronic Health Records Using Deep Learning Systems: An Empirical Study”, JMIR Medical Informatics, 2021

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  • A. Mitra, B. P. S. Rawat, D. McManus, A. Kapoor, H. Yu, “Bleeding Entity Recognition in Electronic Health Records: A Comprehensive Analysis of End-to-End Systems”, AMIA Annual Symposium, 2020

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  • A. Mitra, K. Ashraf, "Sepsis Prediction and Vital Signs Ranking in Intensive Care Unit Patients", arXiv preprint arXiv:1812.06686, 2018

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  • R. Ahsan, A. Mitra, S. Omar, M. Z. R. Khan, M. A. Basith, "Sol−gel synthesis of DyCrO3 and 10% Fe-doped DyCrO3 nanoparticles with enhanced photocatalytic hydrogen production abilities", RSC Advances, 2018

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Selected Projects

  • SemRad, a Teleradiology Solution

    A complete teleradiology solution that incorporates deep learning models to detect chest abnormalities. The framework is JavaFX and SQL is at backend. This was a professional project.

  • Salt Identification Challenge

    This is a kaggle competition where the objective was to segment salt image pixels from seismic images. With just two weeks of work, my team ended up being in the top 11% (355th out of 3234 teams). We used a modified U-net incorporating residual block that was trained at multiple stages using lovasz and focal loss functions.

  • SemSepsis, a sepsis detection GUI

    This is an extension of my ongoing research work for deep learning based Sepsis screening system from EHR data. It's built using pyQt4. Here is a demo. This was a professional project.

  • Bengali Handwritten Digit Recognition

    This is the first kaggle competition to hold a large scale digit recognition challenge for bengali handwritten digits. My team became 12th out of 57 teams (top 23%). We used several image processing techniques and finetuned a pretrained densenet model.

  • Retinal Vessel segmentation via ANN, SVM and CNN

    This was performed on DRIVE dataset, using Unet based architecture with residual blocks. Fully connected neural networks and SVM were also used for comparative analysis.

  • Faulty semiconductor wafer detection from machine logs

    To detect faulty semiconductor wafer from Japanese machine logs, the logs were first translated to English, went through multiple preprocessing steps and then a TextCNN based model was used. This was a professional project.

  • Hangman for GRE students, an Android app

    This is a hangman game but with a twist. This uses GRE words from Barron and Magoosh. Player can select difficulty level, word source, whether to show the meaning of a word in the end etc. I made this for fun.

  • Detection of Arrhythmia based on DWT using ANN, SVM and RF

    Taking DWT features of an ECG signal, ANN, SVM and RF models were used to detect 4 categories of arrhythmia and a comparative study was performed. This was an academic project. The project report is available here.

  • PhotoPlay, An android app for children

    This app was designed to help children stimulate their cognitive development. It uses an inception v3 model as it's backbone, pretrained on ImageNet dataset and fine-tuned on additional data. It was part of a research work which later got accepted in 2017 IEEE Region 10 Humanitarian Technology Conference (R10-HTC). Details are in the Publications section.

  • Differential Diagnoses, an amazon Alexa skill

    This Alexa skill can speak out all differential diagnoses for user fed symptoms. It has a comprehensive list of 1700 differential diagnoses and their corresponding mapping to symptoms.

  • Risk factors detection for heart diseases in diabetic patients

    Using bidirectional LSTM and CRF based entity recognition model, risk factors were detected for heart diseases in diabetic patients. The dataset was from i2b2. This was a professional project.

  • HealthGeek, an Android app

    This is an android app that can detect diseases based on input symtoms. This also has a disease dictionary and an embedded google search link for each disease. The app is available in Google Play.

  • Gate level design, cell layout and simulation of a 3-bit Multiplier

    This was the final project for VLSI II Laboratory. This was an academic project.

  • Gate level design and simulation of an 8-bit Microprocessor (Modified SAP)

    This was the final project for Microprocessor and Interfacing Laboratory. This was an academic project.

  • Gesture based pong game implementation on a TFT display

    A nokia 5510 display was interfaced with arduino, potentiometer and sonar sensors to build the whole system. Players had option to either use onboard switch for control or go free by giving hand gestures to move the bar. A demo is available on Youtube.This was an academic project.

  • Home security system via push message service

    Arduino along with GSM module, LCD panel, proximity and sonar sensors were used for this project. This was an academic project.

  • Gate level design and simulation of a 4-bit Arithmetic Logic Unit

    This was the final project for Digital Electronics Laboratory. This was an academic project.

  • Home Automation

    This was a group project. We built a home automation system that can be controlled and monitored to switch and regulate electric loads using an android app we designed. This prototype used bluetooth to connect.

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